Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDYINRILHFIKEHMTYHVNFIDDFLDIKWEKVSNIHLRFWTT-IIAYLVIFILSISTV----ILNLVLLFQGFLTQN---PIIYL-----LFFITLVCAFYFAYKFITYTPTIVKNALQYIKKLKNV---
1JYO Chain:A ((1-130))
-LQAHQDIIANIGEKLGLPLTF-DDNNQCLLLLDSDIFTSIEAKDDIWLLNGMIIPLSPVCGDSIWRQIMVINGELAANNEGTLAYIDAAETLLLIHAITDLTNTYHIISQLESFVNQQEALKNILQEYAKV
General information:
TITO was launched using:
RESULT:
Template:
1JYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147396 for 702 contacts (-210.0/contact) +
2D Compatibility (PS) -12142 + (NN) -588 + (LL) 412
1D Compatibility (HY) -8800 + (ID) 1200
Total energy: -169714.0 ( -241.76 by residue)
QMean score : 0.139
(partial model without unconserved sides chains):
PDB file :
Tito_1JYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYO-query.scw
PDB file :
Tito_Scwrl_1JYO.pdb
: