Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
4NBJ Chain:E ((1-157))
MRVVIQRVKGAILSVR--------KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDI
General information:
TITO was launched using:
RESULT:
Template:
4NBJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90558 for 946 contacts (-95.7/contact) +
2D Compatibility (PS) -14985 + (NN) -7758 + (LL) 340
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -130161.0 ( -137.59 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_4NBJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBJ-query.scw
PDB file :
Tito_Scwrl_4NBJ.pdb
: