Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNKNKIERQKRIKRLIQSGQIGTQEEIKLHLKNEGIDVTQATLSRDLREIGLLKLRS----------PE-GKLYYSLSTATSNRFSPALRSYILKVSRASFMLVLNTNLGEASVLANFIDEKGLPEILGTMAGADTLLVICQ----NEDIAKVFEKELSVGL
3LAJ Chain:E ((17-167))
----NRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPEDGSPVRGVSGGT-DRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENLR----
General information:
TITO was launched using:
RESULT:
Template:
3LAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69555 for 877 contacts (-79.3/contact) +
2D Compatibility (PS) -14909 + (NN) -3784 + (LL) 400
1D Compatibility (HY) -10400 + (ID) 2850
Total energy: -101098.0 ( -115.28 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3LAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAJ-query.scw
PDB file :
Tito_Scwrl_3LAJ.pdb
: