Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKIITVGKLKEKYLKEGVAEYQKRLNRFSKIETIELADEKTPDKASISENQRILDIEGERILSKIGERDYVIGLAIEG--KQLPSESFSHLIDQKMISGYSTITFVIGGSLGLSQKVKKRADYLMSFGLLTLPHQLMKLVLMEQIYRAFMIRQGTPYHK
3DCM Chain:X ((107-159))
-----------------------------------------------------------------------LIFFTSAKKRENDISFEEGRRIII----ETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY----
General information:
TITO was launched using:
RESULT:
Template:
3DCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28253 for 279 contacts (-101.3/contact) +
2D Compatibility (PS) -5512 + (NN) -2451 + (LL) 6552
1D Compatibility (HY) -4800 + (ID) 350
Total energy: -34814.0 ( -124.78 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_3DCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DCM-query.scw
PDB file :
Tito_Scwrl_3DCM.pdb
: