Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKEEGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATVEIEVQNQYLTI-IRSGKAEFNLNGLDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSELLCTATDSHRLALRKAKLDIPE-DRSYNVVIPGKSLTELSKILDDNQELVDIVITE-------TQVLFKAKNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEIRVSFTGAMRPFLIRTPN---------------DETIVQLILPVRTY |
5AGV Chain:A ((17-405)) | LTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGA--------EIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGN--RVALTCGNARFSLPTMPVEDYPTLPTLPE-ETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGG-SDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADR-GA-QVRMEFA-DGSVRLSAGADDVGRAEEDLVV-DYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPLNGNGPFPAVSTDYVYLLMPVRLP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5AGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -233665 for 2956 contacts (-79.0/contact) +
2D Compatibility (PS) -38921 + (NN) -9254 + (LL) 488
1D Compatibility (HY) -25600 + (ID) 5000
Total energy: -311952.0 ( -105.53 by residue)
QMean score : 0.558
|
|
|