Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MTYHEWKDLALFYSVESTQKFLEKVYILNG----IND--AKKNSFKNSER-----FIYFLKHAESFYKQAAYSPLEIKPILLFYGMAQLIKACLITRDPHYPSHTSVLAHGVTTRKRKKQNYCFSDDEVKIQRNGLCVHFMKHLFGQSDIVDERYTMKKLLMA-----IPELSDIFY----FQQKERF-MTKVEKDKNEIFVPEEVVINYKMSDSRFAEYMSHHYQWSFTKKNEHGLLFEISPQDKEPWTSTSLLFDMEKNQYYIPSQREQFLRLPEMT-IHYLILYNVG--MIARYETEWWYELLTQHISDDYVLIQ--------QFLLVSEK-KFPKYASQFLLHF |
| 4KRT Chain:A ((7-353)) | HHHHHMQSRNNNNLKGIDVSNWKGNINFESVKNDG--VEVVYIKATEGNYFKDKYAKQNYEGAKEQGLSVGFYHFFRANKGAKDQANFFIDYLNEI----GAVNY--DCKLALDIETT-------EGVGVRDLTSMCIEFLEEVKRLTGKEVVVYTYTSFANNN--LDSRLGNYPVWIAHYGVNTPGANNIWSSWVGFQYSENGSVAGVNGGCDMNEFTEEIFIDSSNFNLDNATTKNVSTKLNIRAKGTTNSKIIGSIPAGETFKIKWVDEDYLGWYYVEYNGVVGYVNADYVEKLQMATTYNVSTFLNVREEGSLNSRIVDKINSGDIFRIDWVDSDFIGWYRITTKNGKVGFVNAEFVKKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KRT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68562 for 2211 contacts (-31.0/contact) +
2D Compatibility (PS) -29939 + (NN) 11741 + (LL) 1720
1D Compatibility (HY) -9600 + (ID) 2750
Total energy: -97390.0 ( -44.05 by residue)
QMean score : 0.002
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