Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDELYMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGGMLSAFFRELRKKKKAARKNLSE
1Z3A Chain:B ((10-158))
----EYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIK--------
General information:
TITO was launched using:
RESULT:
Template:
1Z3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103576 for 1273 contacts (-81.4/contact) +
2D Compatibility (PS) -16309 + (NN) -8366 + (LL) 928
1D Compatibility (HY) -13200 + (ID) 3300
Total energy: -143823.0 ( -112.98 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1Z3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z3A-query.scw
PDB file :
Tito_Scwrl_1Z3A.pdb
: