Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMED----------------QYGKSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAVNN-SF------YEDEHTTEKEWKDQIRYNILLEDLLT----RDIDISNKELESFYNKNKELYQFDDSYRIRHIVVKDEE------------EAREVLKEL------------------------------------------------------------------------------------------------------------KGG-SSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEEAKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKAT--VKTLWKEADVSWFYGEKSTK |
| 1M5Y Chain:A ((25-427)) | ----------------------------------VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQV-------TELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPD--IFDPAFRDALTRLNKGQMS-APVHSSFGWHLIELLDTRNVD---------RAYRMLMNRKFSEEAASWMQEQRASAYVKILS------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20283 for 1284 contacts (-15.8/contact) +
2D Compatibility (PS) -26790 + (NN) -15293 + (LL) 4500
1D Compatibility (HY) -12400 + (ID) 2700
Total energy: -72966.0 ( -56.83 by residue)
QMean score : 0.447
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