Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQ-GFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT
3N3W Chain:A ((33-142))
-----------SYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGD--------FILMSVAEENNGGKEKPS----ILSDALEAIIGAIHLEAGFEFAKTIALRLIEKN-----------
General information:
TITO was launched using:
RESULT:
Template:
3N3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31893 for 745 contacts (-42.8/contact) +
2D Compatibility (PS) -12083 + (NN) -7221 + (LL) 2416
1D Compatibility (HY) -6400 + (ID) 1250
Total energy: -56431.0 ( -75.75 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_3N3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3W-query.scw
PDB file :
Tito_Scwrl_3N3W.pdb
: