Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQQHDYVIGKNAVIETLKSDRKLYKLWMAENTVKGQAQQVIELAKKQGITIQYVPRKKLDQMVTG-QHQGVVAQVAAYEYAELDDLYKAAEEKNEQPFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARVTNLARTLEEMKERGIWVVGTDASAREDFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFLIKLPMAGKVTSLNASVAAGLLMYEVYRKRNPVGE
4X3L Chain:A ((25-257))
-RTGRFLVEGRREVERALEAGLSLETLLLGPKARPE------DRALAGGAEVLELSERALARVSTRENPAQVLGVFRLP-RRSLAGVT-----LGAAPLVLVLLGLEKPGNLGAILRAADGAGADLVLVAE-GVDLFSPQVIRNSTGAVFALPVYPVAE-GEAARFLEEHNLPLVAATPEGERLYWEGDYRGGVAFLLGAEDKGLPEAWKRRAQVRVRIPMRGRADSLNVAVTAALLLYEALRQRSGG--
General information:
TITO was launched using:
RESULT:
Template:
4X3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118730 for 1847 contacts (-64.3/contact) +
2D Compatibility (PS) -25643 + (NN) -6908 + (LL) 1980
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -165801.0 ( -89.77 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4X3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X3L-query.scw
PDB file :
Tito_Scwrl_4X3L.pdb
: