Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK
3T1Y Chain:L ((2-119))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGT------
General information:
TITO was launched using:
RESULT:
Template:
3T1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14077 for 790 contacts (-17.8/contact) +
2D Compatibility (PS) -12721 + (NN) -5014 + (LL) 916
1D Compatibility (HY) -10800 + (ID) 4450
Total energy: -46146.0 ( -58.41 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_3T1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T1Y-query.scw
PDB file :
Tito_Scwrl_3T1Y.pdb
: