Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPLLTPTSVVLGVLLSQFLNGYEWAVPWIFAFITFAGSLSANFQSLRHALSHPLPMILALFVLHIFMPLFAWGSGHLIFKGDPLTITGLT---LAVVIPTGITSLIWAAMYKGNVG-LTLSIILVDTVLSPLIVPLSLSLLAGAQVHMDVWGMMKGLIVMVVIPSFLGMLF------NQMSSPERTAFVSSALSPFSKLCLMAVIAINSSA--IAPYFKSIDLRF-------------------------AGIAVTVFFIA----LTGYAAAWLIGKMMKRRQEEIVSLIFTGGMRNISAGAVLAVTFFPSQVAVPVVIGMLFQQILAALFGYMLNRFELKPMLQKA-- |
| 1NIJ Chain:A ((2-318)) | -------NPIAVTLLTGFLG-------------------AGKTTLLRHILNEQHGYKIAVIEN----EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQR--YLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIRAAFAGLRK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NIJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -289928 for 2103 contacts (-137.9/contact) +
2D Compatibility (PS) -30011 + (NN) -12890 + (LL) 2972
1D Compatibility (HY) -4800 + (ID) 1450
Total energy: -336107.0 ( -159.82 by residue)
QMean score : 0.219
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