Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRGVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEQAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMKSKEIEDLNNAYETIKEIEKQGQLTGMLEYYFYFFKGMYEFRRKELISAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTYFSMNYANRALKIFREYEEYAVQTVRCQFIVAGNLIDSLEYERALEQFLKSLEISKESNI-EHLIAMSHMNIGICYDELKEYKKASQHLILALEIFEKSKHSFLTKTLFTLTYVEAKQQNYNVALIYFRKGRFIADKSDDKEYSAKF-KILEGLFFS-DG-E-TQLIKNAFSYLASRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIIDENQPDSIGSSDFK
4GPK Chain:A ((7-359))---------RDVEEDVKGKLDEWLNALVHLDKQQVERIYEELQGEMKH-VLDFEIINYYKLLYTRYLIMKRDISALEE-E-LDKL---KKV-YK-KYSPFQKLLYMYGRGLLCCLQYRWKDGLDYLLKTEVMAKEQG--YHETGLYYNIALAYTHLDIHHLAIHFVNMALEGFRSE-YKFRNIINCQILIAVSYTEKGQYEEALKMYESILREATSFADKDVLLAITLSNMGSIYYKKGKYQQAKKYYLDSLQLQKQIDL-NYLDTIYEMALVCIKLEELEEARTLIDKGIDAAKQEERFNAKLYLLLMLRYKYFEEAKDYKAFLENEAIPLYK----------VYVELAEHFSSLSRFEESNRYYRLVIDLMN----------------------


General information:
TITO was launched using:
RESULT:

Template: 4GPK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1314 -147190 -112.02 -435.47
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -112.02
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.404

(partial model without unconserved sides chains):
PDB file : Tito_4GPK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4GPK-query.scw
PDB file : Tito_Scwrl_4GPK.pdb: