Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLFIDNQNINDPRINLAIEEYCVKHLD-PEQQYLLFYVNQPSIIIGKNQNTIEEINTKYVEENGIIVVRRLSGGGAVYHDLGNLNFSFI-TKDDGDSFHNFKKFTEPVIQALHQLGVEAE----------LSGRNDIVVDGRKISGNAQFATKGRIFSHGTLMFDSAIDHVVSALKVKKDKIESKGIKSIRSRVANISEFLDDKMTTEEFRSHLLRHIFNTNDVGNVPEYKLTEKDWETIHQISKERYQNWDWNYGRSPKFNLNHSKRYPVGSIDLHLEVKKGKIEDCKIFGDFFGVGDVSEIENLLVGKQYERSVIADVLEGVNLKHYFGNITKEDFLDLIY
2C8M Chain:B ((15-255))------------RMSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVL------------KSTRERVANVTDFVD--VSIDEVRNALIRGFSETLHI-DFREDTITEKEESLARELFDKKYSTEEWNMG---------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2C8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1127 -131370 -116.57 -605.39
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain B : 0.72

3D Compatibility (PKB) : -116.57
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.555

(partial model without unconserved sides chains):
PDB file : Tito_2C8M.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2C8M-query.scw
PDB file : Tito_Scwrl_2C8M.pdb: