Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNTFYDVQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWARAAAVLRKELEQTKNGRD-----FYKG
2KDU Chain:B ((1-36))----------------------------------------GSRAKANWLRAFNKVRMQLQEARGEGEMSKSLWFKG


General information:
TITO was launched using:
RESULT:

Template: 2KDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 11 397 36.05 12.79
target 2D structure prediction score : 0.90
Monomeric hydrophicity matching model chain B : 0.57

3D Compatibility (PKB) : 36.05
2D Compatibility (Sec. Struct. Predict.) : 0.90
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.836

(partial model without unconserved sides chains):
PDB file : Tito_2KDU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2KDU-query.scw
PDB file : Tito_Scwrl_2KDU.pdb: