Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPNKSKPNRLIAEKSPYLLQHAHNPVDWFPWGEEAFAKAKRENKPVLVSIGYSTTCHWWPGIIKSCGTPLKDNRSHFKR-----------------------------------------------------------------------
3FK8 Chain:A ((3-133))-----------ALNLPY-----DEHADAWTQVKKALAAGKRTHKPTLLVFGANW-CTDCRALDKSLRN--QKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKITE


General information:
TITO was launched using:
RESULT:

Template: 3FK8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 95 -8750 -92.11 -145.83
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -92.11
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.359

(partial model without unconserved sides chains):
PDB file : Tito_3FK8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3FK8-query.scw
PDB file : Tito_Scwrl_3FK8.pdb: