Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDAATTRVGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADR--GAQVRMEFADGSVRLSA-GADDVGRAEEDLVVDYAG--EPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG |
4TRT Chain:A ((1-361)) | -----------VMKANVTKKTLNEGLGLLERVIPSRSSNPLLTALKVETSEGGLTLSGTNLEIDLSCFVPAEVQQPENFVVPAHLFAQIVRNLGGELVELELSGQELSVRSGGSDFKLQTGDIEAYPPLSFPAQADVSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHGESARVVASDGYRVAIRDFPASG----DGKNLIIPARSVDELIRVLKD-GEARFTYG-------DGMLTVTTDRVKMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGTLRLAAEG-DY-GRAQDTLSVTQGGTEQAMSLAFNARHVLDALGPIDG-DAELLFSGSTSPAIFRAVGG-----------------GGGYMAVMVTLR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TRT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -272786 for 2932 contacts (-93.0/contact) +
2D Compatibility (PS) -38520 + (NN) -13924 + (LL) 216
1D Compatibility (HY) -25600 + (ID) 4750
Total energy: -355364.0 ( -121.20 by residue)
QMean score : 0.598
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