Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MAKWLGAPL-ARGVSTATRAKDSDRQDACRIL----DDALRDGELSMEEHRERVSAA----------------TKAVTLGDLQRLVADLQVES-------APAQMPALKSRA--KRTELGLLAAAFVASVLLGVGIGWGV-YGNTRSPLDFTSDPGAKPDGIAPVVL-TPPRQLHSLG------------G-LTGLLEQTR----KRFGDTMGYRLVIYPEYASLDR-VDPADDRRVLAYTY----RGGWGDATSSAKSIAD------VSVVDLSKFDAKTAVGIMR--GAPETLGLKQSDVKSM-------YLIVEPVKDPTTPAALSL-----------------SLYVSSDYGGGYLVFAGDGTIKHVSYPS-------- |
| 3K0B Chain:A ((1-384)) | SSGRENLYFQGMKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSIL-----KDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYELFEEVYGKKATKKRKLYRTDLYQYWGP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3K0B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -41854 for 1959 contacts (-21.4/contact) +
2D Compatibility (PS) -30106 + (NN) -8103 + (LL) -244
1D Compatibility (HY) -5200 + (ID) 2700
Total energy: -88207.0 ( -45.03 by residue)
QMean score : 0.191
|
|
|