Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSFDVVFVGHRRGEVRSDNAMLGLLCDAAFDELTRPDVVIFPGGIGTRTLIHDQTVLDWVREAHRHTLLTTSVCTGGLVLAAAGLLNGLTATTHWRVQDLF-NSLGARYV-P-QRVVEHLPERVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL
3MGK Chain:A ((30-189))
-DDFELNFISSDGGLVESS-QKVRVETSLYTRDENIEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVK--DGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSIEYFWNE--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3MGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87146 for 1153 contacts (-75.6/contact) +
2D Compatibility (PS) -16735 + (NN) -6055 + (LL) 2232
1D Compatibility (HY) -9600 + (ID) 2250
Total energy: -119554.0 ( -103.69 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_3MGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MGK-query.scw
PDB file :
Tito_Scwrl_3MGK.pdb
: