Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRPRVVIACGDCALNRGVFA---DAYGVVG---AVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK
1YQ9 Chain:B ((98-165))
-------------------------------------------------------------------------------------------------EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLTK
General information:
TITO was launched using:
RESULT:
Template:
1YQ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28945 for 354 contacts (-81.8/contact) +
2D Compatibility (PS) -6823 + (NN) -4602 + (LL) 6048
1D Compatibility (HY) -3200 + (ID) 1200
Total energy: -38722.0 ( -109.38 by residue)
QMean score : 0.288
(partial model without unconserved sides chains):
PDB file :
Tito_1YQ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQ9-query.scw
PDB file :
Tito_Scwrl_1YQ9.pdb
: