Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVTGGVRSGKSTHAEALLGDAA---DVVYVAPGRPAAGS----DPDWDARVALH-RARRPPTWLTVET-ADVATALSEARSPVLVDCLGTWLTAIMDGEALWSAATADVYAVLEARLDGLCAALTGLP-TAIVVTNEVGLGVVPSHSSGVLFRDLLGTINR--------------RVAAVCDEVHLVIAGRVLKL
1OXX Chain:K ((33-220))
-RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD-DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFP-RELSGAQQQRVALARAL--VKDPSLLLLDEPFSNLDARM--RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV--
General information:
TITO was launched using:
RESULT:
Template:
1OXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82115 for 1139 contacts (-72.1/contact) +
2D Compatibility (PS) -17385 + (NN) -4719 + (LL) 420
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -108949.0 ( -95.65 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_1OXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXX-query.scw
PDB file :
Tito_Scwrl_1OXX.pdb
: