Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTGVTRQKILITGASSGLGAGMARSFAAQGRDLALCARRTDRLTELKAELSQRYPDIKIAVAELDVNDHERVPKVFAELSDEIGGIDRVIVNAGI-GKGARLGSGKLWANKATIETNLVAALVQIETALDMFNQRGSGHLVLISSVLGVKGVPGVKAAYAASKAGVRSLGESLRAEYAQRPIRVTVLEPGYIESEMTAKSASTMLMVDNATGVKALVAAIEREPGRAAVPWWPWAPLVRLMWVLPPRLTRRFA
1IY8 Chain:H ((10-229))
---RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI-GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENS---MKQLDPENPRKAAEEFIQVNPSK---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1IY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117841 for 1837 contacts (-64.1/contact) +
2D Compatibility (PS) -24046 + (NN) -11902 + (LL) 3036
1D Compatibility (HY) -8800 + (ID) 3450
Total energy: -163003.0 ( -88.73 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1IY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IY8-query.scw
PDB file :
Tito_Scwrl_1IY8.pdb
: