Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MVGDCPRSRTVRWSWDTGHVTAE-----PQPTPRPAK-PRLLQDGRDMFWSLA---------------PLVVGCILLAGLVGMCS-------FQLGGTKRGPIPSYDAAQALRADAKTLGFPIRLPQLP---GGWT--------------PNSGGRGGIENGRADPATGQRRN----AATS----IVGFISPTGRYLS--LTQSNADEDKLVGSIHPSMYPTGTVDV--GGTRWVVYEGSDEN-----GAVEPV-----WTTRLTGPGGATQLAITGAGSIDQFRTLASATQ----SQPPLPAR |
| 2GOP Chain:A ((10-347)) | TFAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREVPAWEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDPIFAKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GOP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17019 for 1367 contacts (-12.4/contact) +
2D Compatibility (PS) -24122 + (NN) -2303 + (LL) 0
1D Compatibility (HY) -7200 + (ID) 2050
Total energy: -52694.0 ( -38.55 by residue)
QMean score : 0.041
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