Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDH-----AEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGV-------PYTDAL-------PEMPEPAIEVEP-PVCD---CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4HDA Chain:B ((26-274))
--IVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL--------
General information:
TITO was launched using:
RESULT:
Template:
4HDA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108261 for 1882 contacts (-57.5/contact) +
2D Compatibility (PS) -24729 + (NN) -17502 + (LL) 1032
1D Compatibility (HY) -18800 + (ID) 4900
Total energy: -173160.0 ( -92.01 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_4HDA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HDA-query.scw
PDB file :
Tito_Scwrl_4HDA.pdb
: