Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV
2GKN Chain:B ((2-127))
-GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKVVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVT---------
General information:
TITO was launched using:
RESULT:
Template:
2GKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93267 for 854 contacts (-109.2/contact) +
2D Compatibility (PS) -13694 + (NN) -7580 + (LL) 384
1D Compatibility (HY) -17600 + (ID) 6250
Total energy: -138007.0 ( -161.60 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2GKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GKN-query.scw
PDB file :
Tito_Scwrl_2GKN.pdb
: