Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGPTTDADAAVPRRVLIAEDEALIRMDLAEMLR-EEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLGTPKDT
4LDZ Chain:A ((8-117))
---------------IFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGKTGLEAAEELKDTG-CKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAI--------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LDZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69322 for 868 contacts (-79.9/contact) +
2D Compatibility (PS) -11920 + (NN) -6848 + (LL) 8004
1D Compatibility (HY) -10800 + (ID) 1950
Total energy: -92836.0 ( -106.95 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_4LDZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LDZ-query.scw
PDB file :
Tito_Scwrl_4LDZ.pdb
: