Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTRPREIYLATAVSIGILLSLIAPLGPPLARADGTSQLAELVDAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLNNRMLSQIWSHWSLLS--APSCAAQLDRAKRDIVRSRHLDSLYQRALTTATQSYCQALPPA
2GBB Chain:A ((3-153))
--------------------------------------CGQTAPLINERLSYMKDVAGYKAENHLPIEDRIQEEKVINSAMAQAESLGLNGESIKPLMVAQINAAKAIQYRYRADWLSQPE-PGWQPKPLDDVRANIGELSTKILEQIAEELKTCKPAEMGDKAHF----INTIRQHNLTSADVEAIFSTFNQV-------
General information:
TITO was launched using:
RESULT:
Template:
2GBB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24281 for 1107 contacts (-21.9/contact) +
2D Compatibility (PS) -16189 + (NN) -10249 + (LL) 3268
1D Compatibility (HY) -6000 + (ID) 1800
Total energy: -55251.0 ( -49.91 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_2GBB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GBB-query.scw
PDB file :
Tito_Scwrl_2GBB.pdb
: