Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------MIRELVTTAAI-------------TGAAIGGAPVAGADPQRYDGDVPGMNYDASLGAPCSSWE-RFIFGRGPSGQAEACHFPPPNQFPPAETGYWVISYPLYGVQQVGAPCPKPQAAAQSPDGLPMLCLGARGWQPGWFTGAGFFPPEP---------------
5A3G Chain:A ((1-171))
AGHMEIDKNVGADLISNTRRILRLDENELRITDTALICKNPNYSLCDAMLTTDIVYPVEYLLSYWECRSGRTACFVFKNTGCRVSLSCYIGFPERLKDLKRVCDFNFLSVNEALVVT--LADIERIKPCDKGVLTNCVVRKSNSGMSYNIEVVAFGPDNEAEYQALLRDIYAR
General information:
TITO was launched using:
RESULT:
Template:
5A3G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26351 for 912 contacts (-28.9/contact) +
2D Compatibility (PS) -14296 + (NN) -10615 + (LL) 4
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -56758.0 ( -62.23 by residue)
QMean score : 0.038
(partial model without unconserved sides chains):
PDB file :
Tito_5A3G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A3G-query.scw
PDB file :
Tito_Scwrl_5A3G.pdb
: