Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNHPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG-GGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTIAALW
4NPC Chain:B ((18-261))
LNFP-LSEKVAIVTGGASGIGAAISKAFIAKGAKVAVLDISADIAKAKAEELGENAKPFVCDVSSQQSVNDAITAVISQFGKIDIAVNSAGVVYLAPAEDISLDYWDKTININLKGSFLVTQAVGRAMIAAGNGGKIINLASQAGTVAIEEHVAYCASKFGVIGMSKTFAAEWGKYGICVNTLSPTIVLTELGKKAWA---GEKGEAAKKRIPA---GRFAYPEEIAAAAVFLASAGADMITGADLLIDGG------
General information:
TITO was launched using:
RESULT:
Template:
4NPC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152175 for 2146 contacts (-70.9/contact) +
2D Compatibility (PS) -26461 + (NN) -5710 + (LL) 1460
1D Compatibility (HY) -16400 + (ID) 5150
Total energy: -204436.0 ( -95.26 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_4NPC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NPC-query.scw
PDB file :
Tito_Scwrl_4NPC.pdb
: