Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTINYQFGDVDAHGAMIRAQAGLLEAEHQAIVRDVLAAGDFWGGAGSVACQEFITQLGRNFQVIYEQANAHGQKVQAAGNNMAQTDSAVGSSWA
4L0R Chain:A ((33-106))
----GINEELSEVLQTLQDEFGQMSFDHQQLAKLIQESPT----------VELKDKLECELEALVGRMEAKANQITKVRKYQAQLEKQ------
General information:
TITO was launched using:
RESULT:
Template:
4L0R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5730 for 386 contacts (-14.8/contact) +
2D Compatibility (PS) -8184 + (NN) -3418 + (LL) 928
1D Compatibility (HY) -800 + (ID) 400
Total energy: -17604.0 ( -45.61 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_4L0R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L0R-query.scw
PDB file :
Tito_Scwrl_4L0R.pdb
: