Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPWQK-GRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYELRNEHITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKCRLYCGACDAGARSTTSLAAGNGL
4YMI Chain:B ((33-224))
MGGTFDPIHNGHLVAASEVADRFALDEVIFVPTGQPWQKQ-RKVSPAEHRYLMTVIATASNPRFTVSRADIDRGGATYTVDTLTDLRTAHPDADLYFITGADALASILSWENWEQLFTLAKFIGVSRPGYELSSDHIAH--AELPPDGLSLVEVPALAISSTDCRIRAGQARPIWYLVPDGVVQYVAKHRLYSG------------------
General information:
TITO was launched using:
RESULT:
Template:
4YMI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143349 for 1493 contacts (-96.0/contact) +
2D Compatibility (PS) -21040 + (NN) -13418 + (LL) 784
1D Compatibility (HY) -22000 + (ID) 7250
Total energy: -206273.0 ( -138.16 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_4YMI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMI-query.scw
PDB file :
Tito_Scwrl_4YMI.pdb
: