Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSPLATEA
3GWC Chain:E ((2-245))
-AETAPLRVQLIAKTDFLAPPDVPWTTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYLRHIIDVGHFSVLEHASVSFYITGISRSCTHELIRHRHFSYSQLSQRYVPEKDSRVVVPPGMEDDADLRHILTEAADAARATYSELLAKLEAKFADQPNAILRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAAVAPAVFADFEVTTLADGTEVATSP-----
General information:
TITO was launched using:
RESULT:
Template:
3GWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104195 for 1858 contacts (-56.1/contact) +
2D Compatibility (PS) -27214 + (NN) -18085 + (LL) 828
1D Compatibility (HY) -29200 + (ID) 12200
Total energy: -190066.0 ( -102.30 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3GWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GWC-query.scw
PDB file :
Tito_Scwrl_3GWC.pdb
: