Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKNTIAATSFAAAGLAALAVAVSPPAAAGDLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVVGTRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
1NYO Chain:A ((2-163))
-------------------------------DLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVVGTRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
General information:
TITO was launched using:
RESULT:
Template:
1NYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117661 for 1453 contacts (-81.0/contact) +
2D Compatibility (PS) -17142 + (NN) -7754 + (LL) 2672
1D Compatibility (HY) -19200 + (ID) 8100
Total energy: -167185.0 ( -115.06 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1NYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYO-query.scw
PDB file :
Tito_Scwrl_1NYO.pdb
: