Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRSRQPLLDALGVDLPDE-LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVH--VLLGRGEANTGGADKSSILADGMESLLGAIYLQHGMEK--AREVILRLFGP-LLDAAPTLGAGLDWKTSLQELTAARGLGAPSY-LVTSTGPDHDKEFTAVVVVMDSEYGS-GVGRSKKEAEQKAAAAAWKALEVLDNAMPGKTSA
1YYK Chain:B ((5-218))
-----EQLEKKLGYTFKDKSLLEKALTHVSYSKKEH----YETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF-----NLLAQKLELHKFIRIKRGKIN------ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKF--IVEAKIKEYRTLGEGKSKKEAEQRAAEELIKLLE------------
General information:
TITO was launched using:
RESULT:
Template:
1YYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91901 for 1498 contacts (-61.3/contact) +
2D Compatibility (PS) -22602 + (NN) -12165 + (LL) 1524
1D Compatibility (HY) -17200 + (ID) 4100
Total energy: -146444.0 ( -97.76 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_1YYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YYK-query.scw
PDB file :
Tito_Scwrl_1YYK.pdb
: