Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTARPLSELVERGWAAALEPVADQVAHMGQFLRAEIAAGRRYLPAGSNVLRAFTFPFDNVRVLIVGQDPYPTPGHAVGLSFSVAPDVRPWPRSLANIFDEYTADL-GYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRLP
1OKB Chain:B ((54-221))
---------------------------------------------------------QDVKVVILGQDPYHGPNQAHGLCFSVQKPVPP-PPSLVNIYKELCTDIDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKDRGWETFTDAVIKWLSVNREGVVFLLWGSYAHKKGATIDRKRHHVLQAVHPSPLSAHRGFLGCKHFSKANGLLKLSGTEPINWR--
General information:
TITO was launched using:
RESULT:
Template:
1OKB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78214 for 1309 contacts (-59.8/contact) +
2D Compatibility (PS) -18303 + (NN) -11109 + (LL) 4940
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -120586.0 ( -92.12 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1OKB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OKB-query.scw
PDB file :
Tito_Scwrl_1OKB.pdb
: