Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLDHVTKQYKSSAR--PALDDINVKIDKGEFVFLIGPSGSGKSTFMRLLLAAETPTSGDVRVSKFHVNKLRGRHVPKLRQ-VIGCVFQDFRLLQQKTVYDNVAFALEVIGKRTDAIN-----RVVPEVLETVGLSGK-ANRLPDELSGGEQQRVAIARAFVNRPLVLLADEPTGNLDPETSRDIMDLLERINRT-GTTVLMATHDHHIVDSMRQRVVELSLGRLVRDEQRGVYGMDR
1L2T Chain:B ((1-228))
MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL--IFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEK--------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169652 for 1772 contacts (-95.7/contact) +
2D Compatibility (PS) -22966 + (NN) -4151 + (LL) 492
1D Compatibility (HY) -18800 + (ID) 4650
Total energy: -219727.0 ( -124.00 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: