Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVVAEGAYPYCRLTDQPLSVDEVLAAVSG-PEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSSTGAEWVGDRP
1NVJ Chain:D ((11-140))
-----------------QPFSVGEEYPWLAERDEDGAVVTFTGKVRNHN----VNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEAR-
General information:
TITO was launched using:
RESULT:
Template:
1NVJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74673 for 850 contacts (-87.9/contact) +
2D Compatibility (PS) -13919 + (NN) -10667 + (LL) 1028
1D Compatibility (HY) -8000 + (ID) 2450
Total energy: -108681.0 ( -127.86 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1NVJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NVJ-query.scw
PDB file :
Tito_Scwrl_1NVJ.pdb
: