Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISASEARQRLFPLIEQVNTDHQPVRITSRAG-DAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGEE
2ODK Chain:A ((4-52))
HVWPVQDAKARFSEFLDACI-TEGPQIVSRRGAEEAVLVPIGEWRRLQAA------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2ODK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13791 for 267 contacts (-51.7/contact) +
2D Compatibility (PS) -5318 + (NN) -1510 + (LL) 3212
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -21007.0 ( -78.68 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_2ODK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ODK-query.scw
PDB file :
Tito_Scwrl_2ODK.pdb
: