Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGHRAM--IVAGGSNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSLDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
1VPA Chain:B ((15-228))
--------VAILLAAGKGERMSENVPKQFLEIEGRMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALEFLEKFS-PSYVLVHDSARPFLRKKHVSEVLRRARETGAATL-ALKNSDALVRVE-NDRIEYIP-RKGVYRILTPQAFSYEILKKAHENG------GEWADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR-
General information:
TITO was launched using:
RESULT:
Template:
1VPA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162855 for 1717 contacts (-94.8/contact) +
2D Compatibility (PS) -23457 + (NN) -13103 + (LL) 1164
1D Compatibility (HY) -14400 + (ID) 3900
Total energy: -216551.0 ( -126.12 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1VPA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VPA-query.scw
PDB file :
Tito_Scwrl_1VPA.pdb
: