Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MAVLPA-----CRLGLVVCVATAVITATMVLATPSYACACGAAVTAHGSQATLNHE----VALLHWDGT---------TETIVMQLAMNADTDNVALVVPT-PTPAIVTTADQSTFGELDTLSAPLIEHQRHWSLRRGVGASGPQEAAARAPHVLNQVRLGPLEATTLTGGDLSGLQTWLSDNGYAIRPAVSAALDPYVRDGWAFVAIRLTSTDLIVGGLDPVRMTFRSSRLVYPMRLSVAAQEPQHVT-IFTLSDHRQQRTDADAATQTTHVRF--AGDMSTAVRDPLLRELIGNHGSY-----------LTKVEVDIYQTSRISSDFTFGNAPNDDPYRQVVTVYDDVALPPLLLVVVSAIAVGAAGGAVVVVLRRRRRAHTG |
| 1PRE Chain:A ((85-470)) | IPTLSALDIPDGDEVDVQWRLVHDSANFIKPTSYLAHYLGYAWVGGNHSQYVGEDMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFAYNLDPDSFKHGDVTQSDRQLVKTVVGWAVNDPQSGYDVTLRYDTATNWSKT-----NTYGLSEKVTTKNKFKW-PLVGETELSIEIAANQSWASQNGGSTTTSLSQSVRPTVPAR----------------SKIPVKIELYKADISYPYEFKADVSYDLTLSGFLRWGGNAWYTHPDNRPNWNHTFVIGPYKDKASSIRYQWDKRYIPGEVKWWDWNWTIQQNGLSTMQNNLARVLRPVRAGITGDFSAESQFAGNIEIGAPVPLGLRLEIPLDAQELSGLG--FNNVSLSVTPAANQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PRE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85909 for 2377 contacts (-36.1/contact) +
2D Compatibility (PS) -32991 + (NN) 8097 + (LL) 1412
1D Compatibility (HY) -5200 + (ID) 2450
Total energy: -117041.0 ( -49.24 by residue)
QMean score : 0.115
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