Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDPA----GFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG
2OFK Chain:A ((2-183))
-QRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGCFCHP----
General information:
TITO was launched using:
RESULT:
Template:
2OFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98976 for 1368 contacts (-72.4/contact) +
2D Compatibility (PS) -19373 + (NN) -12864 + (LL) 524
1D Compatibility (HY) -18400 + (ID) 4650
Total energy: -153739.0 ( -112.38 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2OFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OFK-query.scw
PDB file :
Tito_Scwrl_2OFK.pdb
: