Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISSFRAQCAARVVREGGVIAY---------PTEAVWGLGCDPWNEDAVYRLL-ALKARPVEKGLIVVAANIHQLDFLLEDLPDVW-LDRLAGTWPGPNTWLVPHQERLPEWV-TGVHDSVAVRVT-DHPLVQELCHLT------GPLISTSANPAGRPAARTRLRVEQYF-HDELDAILGGALGGRRNPSLIRDLVTGQVIRPA
3VEN Chain:A ((397-569))
----NLEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLEVDADFPYMIMTTKVRAAYAER-------LPSVVHEDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPIVSSPADALLTFSRLPIDALAVGPYLVTKDLRH-------------
General information:
TITO was launched using:
RESULT:
Template:
3VEN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90997 for 1216 contacts (-74.8/contact) +
2D Compatibility (PS) -16523 + (NN) -10534 + (LL) 1476
1D Compatibility (HY) 800 + (ID) 1150
Total energy: -116928.0 ( -96.16 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_3VEN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VEN-query.scw
PDB file :
Tito_Scwrl_3VEN.pdb
: