Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------MFMKKLM---LAVGLFAVAGSAFAAKPCEELKA-----EIDAKIKANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVYQRG-
1NYC Chain:A ((1-111))
GSMYQLQFINLVYDTTKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILFIDTAHQRIKFSSFDNEEIIYILDYDDTQHILMQTSSKQGIGTSRPIVYERLV
General information:
TITO was launched using:
RESULT:
Template:
1NYC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7784 for 426 contacts (-18.3/contact) +
2D Compatibility (PS) -7994 + (NN) 2480 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -16798.0 ( -39.43 by residue)
QMean score : 0.059
(partial model without unconserved sides chains):
PDB file :
Tito_1NYC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYC-query.scw
PDB file :
Tito_Scwrl_1NYC.pdb
: