Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLAERLDGERLSDGRYFQVTPGRHVLEVRFQYELYGGSGGGGGGFGEPVQIN------CYQQVVYDGFEAGRRYRLEVRPQLRRALALLSDERGEVVARSNFQTSRCPPY
4H4N Chain:A ((6-67))
----------------------------------------------------KKPIAFKVPPN-SKLKVTFF-------GPYNEVITNVSIINQLSTPKCQTITRYPNY---TKYETEVRSLSSC--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4H4N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10323 for 309 contacts (-33.4/contact) +
2D Compatibility (PS) -6152 + (NN) -2285 + (LL) 5588
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -15522.0 ( -50.23 by residue)
QMean score : 0.149
(partial model without unconserved sides chains):
PDB file :
Tito_4H4N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H4N-query.scw
PDB file :
Tito_Scwrl_4H4N.pdb
: