Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDAALRYPNILFDLDGTLTDPREGITRSVQFALARLGIDEPDLARLEHFIGPPLLQCFMQTYGFD-EARAWEAVNHYRERFRVTGLYENRVFDGIPELLEALVGRGHTLYVATSKPGVFAREIARHFAFDRHFKAIYGSELDGTRTHKEELIRHLLDSEGLAAEHCLMIGDRMHDLLGASRNGVACIGVGYGFGSEDELRAHQPTHYCADLAALRQVLESH
3D6J Chain:A ((5-214))
------KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGKTLEESFSILTGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLI------
General information:
TITO was launched using:
RESULT:
Template:
3D6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138868 for 1782 contacts (-77.9/contact) +
2D Compatibility (PS) -23309 + (NN) -17472 + (LL) 1304
1D Compatibility (HY) -5600 + (ID) 2400
Total energy: -186345.0 ( -104.57 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3D6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D6J-query.scw
PDB file :
Tito_Scwrl_3D6J.pdb
: