Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDRMRGVKSDSPEQESADDALKRIVDGFQHFRREVFPEQQALFKKLANSQRPRAMFITCADSRIVPELITQSSPGDLFVTRNVGNVVPPYGQMN-GGVSTAIEYAVLALGVHHIIVCGHSDCGAMRAVLDPQTLERMPT--VKAWLRHAEVARTVVADNCDCGASHDTLGVLTEENVVAQLDHLRTHPSVASRLASGQLFIHGWVYDIESAQIRAYDAKQGRFLPLDGEHPVPMATPAPRYLSS
1EKJ Chain:B ((12-214))
-------------------EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV----------------
General information:
TITO was launched using:
RESULT:
Template:
1EKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116926 for 1492 contacts (-78.4/contact) +
2D Compatibility (PS) -21584 + (NN) -9592 + (LL) 1100
1D Compatibility (HY) -14800 + (ID) 3450
Total energy: -165252.0 ( -110.76 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1EKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EKJ-query.scw
PDB file :
Tito_Scwrl_1EKJ.pdb
: