Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGRPQAVPTVQVD--NAEVIVTEWRFAP-GAETGRHRH-GHDYVVVPLTDGTLLLETPEGDRHAPLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK
2VPV Chain:A ((78-163))
---------EIMFDKHKEYFASGILKLPAISGQKKLSNSFRTYI-TFHVIQGIVEVTVC-KN-KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFVQVT
General information:
TITO was launched using:
RESULT:
Template:
2VPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28280 for 531 contacts (-53.3/contact) +
2D Compatibility (PS) -9039 + (NN) -986 + (LL) 680
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -40425.0 ( -76.13 by residue)
QMean score : 0.306
(partial model without unconserved sides chains):
PDB file :
Tito_2VPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VPV-query.scw
PDB file :
Tito_Scwrl_2VPV.pdb
: