Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQQHDTHSKAIGYLLWIFGFTGS-----HRFYYGKPITGTIWFFTFGLFFIGWIIDLFLIPSMDREADRRFQGGNL-----DYNVAWILLTFLGVLGVHRMYMGKWITGIIYLFTGGLFFLGVLYDFWT--LNGQVSERNGPQRI
1AOA Chain:? ((121-251))
-----YSEEEKYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVP----DTIDERAINKKKLTPFIIQENLNLALNSASAI-GCHVVNIG--AEDLR--AGKPHLVLGLLWQIIKIGLFADIELSRNEALT
General information:
TITO was launched using:
RESULT:
Template:
1AOA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110751 for 821 contacts (-134.9/contact) +
2D Compatibility (PS) -12014 + (NN) -1462 + (LL) 1452
1D Compatibility (HY) -6000 + (ID) 850
Total energy: -129625.0 ( -157.89 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1AOA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AOA-query.scw
PDB file :
Tito_Scwrl_1AOA.pdb
: