Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR
4FT8 Chain:B ((11-206))
------------LEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE-EG--QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVY---
General information:
TITO was launched using:
RESULT:
Template:
4FT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145625 for 1409 contacts (-103.4/contact) +
2D Compatibility (PS) -20924 + (NN) -3770 + (LL) 1224
1D Compatibility (HY) -24400 + (ID) 6600
Total energy: -200095.0 ( -142.01 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_4FT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FT8-query.scw
PDB file :
Tito_Scwrl_4FT8.pdb
: