Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREP--QYGGP-AADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAPYAGMRFAD
1NPB Chain:E ((1-137))
MLQSLNHLTLAVSDLQKSVTFWHELLGLTLHARWNTGAYLTCGDLWVCLSYDEARQYVPPQESDYTHYAFTVAEEDFEPLSQRLEQAGVTIWKQNKSEGASFYFLDPDGHKLELHVGSLAARLAACREKPYAGMVFTS
General information:
TITO was launched using:
RESULT:
Template:
1NPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72971 for 838 contacts (-87.1/contact) +
2D Compatibility (PS) -14534 + (NN) -6416 + (LL) 0
1D Compatibility (HY) -18000 + (ID) 4100
Total energy: -116021.0 ( -138.45 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1NPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NPB-query.scw
PDB file :
Tito_Scwrl_1NPB.pdb
: